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Table 3 Results of successfully sequenced specimens positive by panspecies adenovirus [15] assay

From: Panspecies molecular assays detect viral pathogens missed by real-time PCR/reverse-transcriptase PCR among pneumonia patients, Sarawak, Malaysia

 

Patient age

Hospital

Sequencing Result

Identity Score

From BLAST

Accession Number from BLAST

rPCR Assay

AdV-Hexon Assay

1.

6 months

Kapit

Human mastadenovirus C

98%

MH121117.1

Neg

Neg

2.

65 years

Kapit

Human mastadenovirus E

99%

KY996453.1

Pos

Pos

3.

1 month

Kapit

Human mastadenovirus C

98%

MH121117.1

Neg

Neg

4.

66 years

Sibu

Human mastadenovirus C

97%

MH121097.1

Neg

Neg

5.

1 year

Sibu

Human adenovirus C

95%

MF358574.1

Pos

N/Aa

6.

10 months

Kapit

Human adenovirus 41

98%

KX868523.2

Neg

N/Aa

7.

6 months

Sibu

Human adenovirus C

98%

MF358562.1

Pos

N/Aa

8.

4 months

Kapit

human adenovirus 41

98%

KX868523.2

Neg

N/Aa

9.

1 year

Kapit

Human adenovirus 5

98%

MF358601.1

Pos

Pos

10.

35 years

Sibu

Human adenovirus 4

99%

AP014851.1

Pos

Pos

11.

3 years

Sibu

Human adenovirus B

99%

KF268212.1

Pos

Neg

12.

2 years

Sibu

Human adenovirus 7

99%

MG923582.1

Pos

Neg

13.

2 years

Sibu

Human adenovirus 7

98%

MG923582.1

Pos

Neg

14.

9 months

Sibu

Human adenovirus 7

98%

MG923582.1

Pos

Neg

15.

6 months

Kapit

Human adenovirus 7

97%

MG923582.1

Pos

Pos

16.

2 years

Sibu

Human adenovirus 7

99%

MG923582.1

Pos

Neg

17.

1 month

Sibu

Human adenovirus 5

99%

MF358604.1

Pos

Neg

18.

8 months

Sibu

Human adenovirus 7

98%

MG923582.1

Pos

Pos

19.

8 months

Sibu

Human adenovirus 7

98%

MG923582.1

Pos

Pos

20.

7 months

Sibu

Human adenovirus 7

98%

MG923582.1

Pos

Pos

21.

1 year

Sibu

Human adenovirus 7

97%

MG923582.1

Pos

Pos

22.

8 months

Sibu

Desmondus rotundus adenovirus 1

100%

KX774303.1

Pos

Pos

23.

1 month

Sibu

Desmondus rotundus adenovirus 1

100%

KX774303.1

Pos

Pos

24.

6 months

Sibu

Human adenovirus 7

96%

MG923582.1

Pos

Pos

25.

3 months

Sibu

Human adenovirus 7

93%

MG923582.1

Pos

Pos

26.

4 months

Sibu

Human adenovirus 7

98%

MG923582.1

Pos

Pos

27.

2 years

Sibu

Human adenovirus 7

98%

MG923582.1

Pos

Pos

28.

2 months

Sibu

Human adenovirus 7

97%

MG923582.1

Pos

Pos

29.

54 years

Sibu

Human adenovirus 5

96%

MF358604.1

Pos

Neg

30.

78 years

Sibu

Human adenovirus 5

98%

MF358604.1

Pos

Neg

  1. aSpecimens at Duke-NUS not run by conventional AdV-Hexon assay